Move branching process model forward from generation g to generation g+1.
Usage
outbreak_step(
case_data,
g,
hrc_mu,
hrc_disp,
lrc_mu,
lrc_disp,
prop_pep,
rel_risk,
p_hrc_case,
p_lrc_case
)Arguments
- hrc_mu
Average number of high-risk contacts
- hrc_disp
Dispersion parameter for number of high-risk contacts
- lrc_mu
Average number of low-risk contacts
- lrc_disp
Dispersion parameter for number of low-risk contacts
- prop_pep
Proportion of high-risk contacts that receive PEP
- rel_risk
Relative risk of a high-risk contact becoming a case after receiving PEP
- p_hrc_case
Probability that a high-risk contact becomes a case
- p_lrc_case
Probability that a low-risk contact becomes a case
- outbreak_data
A data.frame of cases up to generation
g+1.